HOLA



Code Dir



Some Syst Codes

Some Syst needs templating/estimation/combination/PE
cafsub_estimate_ttop25_some_Syst_Jan09th.sh

Bootstrap

Bootstrap dir :
/cdf/s13/tangjian/Analysis/summer2010/METJ_KDE/myKDErelease/TMTCode/kdecode
-- codes
runBootstrap_METJ.sh
runBootstrap_bg_METJ.sh
locations_METJ.txt
sub_pe_bootstrap_set?.sh
sub_pe_bg_bootstrap.sh

Get bootstrap results :

  1. go to /cdf/s13/tangjian/Analysis/summer2010/PEresults/bootstrap/
    After extraction, combine the root files to 60 parts, using script combinebootstraps.sh in /cdf/s13/tangjian/Analysis/summer2010/PEresults/bootstrap/ttkt75/temp/results
  2. Use plotbootstrap.C (find a sample in /cdf/s13/tangjian/Analysis/summer2010/PEresults/bootstrap/ttkt75/plotbootstrap.C )to get the bootstrap results for that particular sample
  3. Save the results: ttkt75  ttkt72  ttkt60  bkgd




Refer to
/cdf/s13/tangjian/4invf/PEresults/bootstrap_results
/cdf/s13/hslee/MASS_p28/PEresults/boostrap
/cdf/s13/hslee/MASS_p28/kde_2k100602/TMTCode/kdecode
/data/nchi10/b/tangjian/Analysis/myKDErelease/TMTCode/kdecode

BiasCheck

Biascheck dir:
/cdf/s13/tangjian/Analysis/summer2010/METJ_KDE/myKDErelease/TMTCode/kdecode

Codes:

:massive estimation for biascheck:
cafsub_estimate_biascheck_Signal_Jan06th.sh

:massive combination scripts generator:
writeout_cafsub_combine_biascheck.sh

:massive biascheck PE cafsub script generator:
writeout_cafsub_PE_biascheck.sh

qsub

A pbs file looks like:
  #PBS -N BS_weight
  #PBS -q cdf
  #PBS -j oe
  #PBS -S /bin/bash
  source ~cdfsoft/cdf2.shrc
  setup cdfsoft2 6.1.4

  unset DISPLAY

  cd /your/code/dir
  nice ./yourscripts.sh ... >& yourLOG.log

then you ssh to cdf30 and type the following on the terminal:
  qsub my_pbs_file -z -r y

Refer [HERE] for PBS command reference
Commonly Used commands
  qstat list information about queues and jobs
  qstat -au userid list all jobs owned by user userid
  qstat -f jobid list all information known about specified job
  
  qdel Delete a batch job
  qsub Submit a job